bin_maker: Take input of a GRanges object, and use that seqinfo to bin...
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
bin_maker R Documentation
Take input of a GRanges object, and use that seqinfo to bin by bin_size
Description
Take input of a GRanges object, and use that seqinfo to bin by bin_size
Usage
bin_maker(grr, bin_size = 30000, genome = NULL, one_to_x = TRUE)
Arguments
grr
GRanges object with seqinfo used to make bins
bin_size
base pairs by which to bin
genome
use this to add seqinfo if none extant (e.g. "hg19", "hg38")
one_to_x
logical indicating whether to use chr1..chrX for bin, as opposed to what is in input GRanges
Value
GRanges bin
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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| bin_maker | R Documentation |
Take input of a GRanges object, and use that seqinfo to bin by bin_size
Description
Take input of a GRanges object, and use that seqinfo to bin by bin_size
Usage
bin_maker(grr, bin_size = 30000, genome = NULL, one_to_x = TRUE)
Arguments
grr |
GRanges object with seqinfo used to make bins |
bin_size |
base pairs by which to bin |
genome |
use this to add seqinfo if none extant (e.g. "hg19", "hg38") |
one_to_x |
logical indicating whether to use chr1..chrX for bin, as opposed to what is in input GRanges |
Value
GRanges bin
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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