process_in_list: Processing list of Facets input
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_facets.R
process_in_list R Documentation
Processing list of Facets input
Description
Processing list of Facets input
Usage
process_in_list(fin_list, which_genome, pp_match, cgc_gr, work_dir)
Arguments
fin_list
of data from Facets
which_genome
genoem assembly being used "hg19" or "hg38"
pp_match
character path to a ploidy/purity format output of facets
cgc_gr
GRanges of cancer gene census from COSMIC
work_dir
chanracter dir in which files found
Value
purity-ploidy dataframe, also write rds used
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_facets.R
| process_in_list | R Documentation |
Processing list of Facets input
Description
Processing list of Facets input
Usage
process_in_list(fin_list, which_genome, pp_match, cgc_gr, work_dir)
Arguments
fin_list |
of data from Facets |
which_genome |
genoem assembly being used "hg19" or "hg38" |
pp_match |
character path to a ploidy/purity format output of facets |
cgc_gr |
GRanges of cancer gene census from COSMIC |
work_dir |
chanracter dir in which files found |
Value
purity-ploidy dataframe, also write rds used
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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