gridss_parse_multi_vcf: Parse multi-sample VCF (recommended output of GRIDSS)
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_gridss.R
gridss_parse_multi_vcf R Documentation
Parse multi-sample VCF (recommended output of GRIDSS)
Description
Parse multi-sample VCF (recommended output of GRIDSS)
Usage
gridss_parse_multi_vcf(vcf, germline_id, which_genome = NULL)
Arguments
vcf,
the VCF file path
which_genome,
genome assembly used ("hg19", "hg38")
Value
a list with recurrent SVs and private SVs as elements
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_gridss.R
| gridss_parse_multi_vcf | R Documentation |
Parse multi-sample VCF (recommended output of GRIDSS)
Description
Parse multi-sample VCF (recommended output of GRIDSS)
Usage
gridss_parse_multi_vcf(vcf, germline_id, which_genome = NULL)
Arguments
vcf, |
the VCF file path |
which_genome, |
genome assembly used ("hg19", "hg38") |
Value
a list with recurrent SVs and private SVs as elements
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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