rdata_gr_list: run function to make list of GRanges per caller
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_variantconsensus.R
rdata_gr_list R Documentation
run function to make list of GRanges per caller
Description
run function to make list of GRanges per caller
Usage
rdata_gr_list(in_vec, germline_id, callers, out_ext, raw_vcf_pattern)
Arguments
in_vec
vector of VCFs to parse
germline_id
ID for germline_id sample
callers
the variant callers for which VCFs are present in dir
out_ext
the extension after caller in filename of VCF
raw_vcf_pattern
pattern to match raw unannotated, unfiltered VCFs unfiltered
Value
none, creates an RData object
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_variantconsensus.R
| rdata_gr_list | R Documentation |
run function to make list of GRanges per caller
Description
run function to make list of GRanges per caller
Usage
rdata_gr_list(in_vec, germline_id, callers, out_ext, raw_vcf_pattern)
Arguments
in_vec |
vector of VCFs to parse |
germline_id |
ID for germline_id sample |
callers |
the variant callers for which VCFs are present in dir |
out_ext |
the extension after caller in filename of VCF |
raw_vcf_pattern |
pattern to match raw unannotated, unfiltered VCFs unfiltered |
Value
none, creates an RData object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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