master_intersect_snv_grlist: Find intersect from list of SNV GRanges

In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline

Find intersect from list of SNV GRanges

Description

Find intersect from list of SNV GRanges

Usage

master_intersect_snv_grlist(gr_list, ps_vec, dp_vec, tag, which_genome)

Arguments

gr_list	list of named GRanges objects
ps_vec	mcols columns to keep p(er) s(ample; appended with list element's name)
dp_vec	mcols columns to d(edu)p(licate); appended as-is if all same; if varaitions, usual 'dot number' formatting applies)
tag	to apply to output file (master)
which_genome	hg19 or hg38

Value

list of GRanges object of shared intersecting, and all mutations with ps_vec, dp_vec columns, and original rownames (should be unique therefore)

brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.