prep_plot_circos_sv: OmicCircos plotting from data.frame from GRIDSS bedpe
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_gridss.R
prep_plot_circos_sv R Documentation
OmicCircos plotting from data.frame from GRIDSS bedpe
Description
OmicCircos plotting from data.frame from GRIDSS bedpe
Usage
prep_plot_circos_sv(input_df, which_genome, dict_file, output_path)
Arguments
input_df
data.frame with chrom1, start1, end1, symbol1,
chrom2, start2, end2, symbol2, sampleID, colour columns
which_genome,
genome assembly used ("hg19", "hg38")
dict_file
dictionary file for fasta used in alignment
output_path
path to where PDF file with output plot is written
N.B. two pages, one with Circos plot and one with legend
Value
none, prints plot to file, and a file too
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_gridss.R
| prep_plot_circos_sv | R Documentation |
OmicCircos plotting from data.frame from GRIDSS bedpe
Description
OmicCircos plotting from data.frame from GRIDSS bedpe
Usage
prep_plot_circos_sv(input_df, which_genome, dict_file, output_path)
Arguments
input_df |
data.frame with chrom1, start1, end1, symbol1, chrom2, start2, end2, symbol2, sampleID, colour columns |
which_genome, |
genome assembly used ("hg19", "hg38") |
dict_file |
dictionary file for fasta used in alignment |
output_path |
path to where PDF file with output plot is written N.B. two pages, one with Circos plot and one with legend |
Value
none, prints plot to file, and a file too
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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