parse_input_df: find ChimerKB data in user data
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_gridss.R
parse_input_df R Documentation
find ChimerKB data in user data
Description
find ChimerKB data in user data
Usage
parse_input_df(input_df, cytoband)
Arguments
input_df
data.frame with chrom1, start1, end1, symbol1,
chrom2, start2, end2, symbol2, qualscore, sampleID, colour columns
cytoband
internal file downloaded in prep_plot_circos_sv
Value
plot_input_df_list list with elements input_df (as per input), region1, region2, region_c, log10quals, labels_o1, labels_o2, labels_o
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_gridss.R
| parse_input_df | R Documentation |
find ChimerKB data in user data
Description
find ChimerKB data in user data
Usage
parse_input_df(input_df, cytoband)
Arguments
input_df |
data.frame with chrom1, start1, end1, symbol1, chrom2, start2, end2, symbol2, qualscore, sampleID, colour columns |
cytoband |
internal file downloaded in prep_plot_circos_sv |
Value
plot_input_df_list list with elements input_df (as per input), region1, region2, region_c, log10quals, labels_o1, labels_o2, labels_o
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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