vcf_parse_gr: Parses for VCFs into GRanges object
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_variantconsensus.R
vcf_parse_gr R Documentation
Parses for VCFs into GRanges object
Description
Parses for VCFs into GRanges object
Usage
vcf_parse_gr(vcf_in, germline_id)
Arguments
vcf_in
VCF path input
germline_id
ID for germline_id sample
Value
vector of single-letter HGVS protein IDs
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_variantconsensus.R
| vcf_parse_gr | R Documentation |
Parses for VCFs into GRanges object
Description
Parses for VCFs into GRanges object
Usage
vcf_parse_gr(vcf_in, germline_id)
Arguments
vcf_in |
VCF path input |
germline_id |
ID for germline_id sample |
Value
vector of single-letter HGVS protein IDs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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