vcf_vep_ann_parse_soma_gr: Parses for VCFs annotated by VEP into GRanges object takes...
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_variantconsensus.R
vcf_vep_ann_parse_soma_gr R Documentation
Parses for VCFs annotated by VEP into GRanges object
takes CANONICAL annotation or first if no CANONICAL
Description
Parses for VCFs annotated by VEP into GRanges object
takes CANONICAL annotation or first if no CANONICAL
Usage
vcf_vep_ann_parse_soma_gr(vcf_in, germline_id)
Arguments
vcf_in
VCF path input
germline_id
ID for germline_id sample
Value
vector of single-letter HGVS protein IDs
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_variantconsensus.R
| vcf_vep_ann_parse_soma_gr | R Documentation |
Parses for VCFs annotated by VEP into GRanges object takes CANONICAL annotation or first if no CANONICAL
Description
Parses for VCFs annotated by VEP into GRanges object takes CANONICAL annotation or first if no CANONICAL
Usage
vcf_vep_ann_parse_soma_gr(vcf_in, germline_id)
Arguments
vcf_in |
VCF path input |
germline_id |
ID for germline_id sample |
Value
vector of single-letter HGVS protein IDs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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