gr_super_set: Create GRanges 'superset' from GRanges per-sample, per-caller...

In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline

Create GRanges 'superset' from GRanges per-sample, per-caller variants contains all variants found per sample in any caller

Description

Create GRanges 'superset' from GRanges per-sample, per-caller variants contains all variants found per sample in any caller

Usage

gr_super_set(var_list, name_callers, impacts)

Arguments

var_list	is a nested list of [[caller]][[samples1..n]]
name_callers	is a set of two callers used for initial screening
impacts	VEP impacts (one or combination of "HIGH", "MODERATE", "MODIFIER", "LOW")

Value

GRanges 'superset' of all callers, and samples therein

brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.