gridss_parse_plot: GRIDSS functions
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_gridss.R
gridss_parse_plot R Documentation
GRIDSS functions
Description
Wrapper to plot multi-sample VCF list (recurrent and not)
Usage
gridss_parse_plot(
vcf,
dict_file,
germline_id,
which_genome = NULL,
output_path = NULL
)
Arguments
vcf,
the VCF file path
dict_file
dictionary file for fasta used in alignment
which_genome,
genome assembly used ("hg19", "hg38")
output_path,
file path to output plots
Value
none, plots recurrent and private SVs and writes output to TSV format file
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
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View source: R/somenone_gridss.R
| gridss_parse_plot | R Documentation |
GRIDSS functions
Description
Wrapper to plot multi-sample VCF list (recurrent and not)
Usage
gridss_parse_plot( vcf, dict_file, germline_id, which_genome = NULL, output_path = NULL )
Arguments
vcf, |
the VCF file path |
dict_file |
dictionary file for fasta used in alignment |
which_genome, |
genome assembly used ("hg19", "hg38") |
output_path, |
file path to output plots |
Value
none, plots recurrent and private SVs and writes output to TSV format file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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