gridss_bedpe_list: Produce a list of bedpe, from a list of breakpoint GRanges,...
In brucemoran/somenone: R functions required by the somenone NextFlow nf-core pipeline
View source: R/somenone_gridss.R
gridss_bedpe_list R Documentation
Produce a list of bedpe, from a list of breakpoint GRanges,
with score > qual_filt and both breakpoints within annotated genes
Description
Produce a list of bedpe, from a list of breakpoint GRanges,
with score > qual_filt and both breakpoints within annotated genes
Usage
gridss_bedpe_list(bpgr_list, which_genome, qual_filt = 2)
Arguments
bpgr_list
list of per-sample breakpont GRanges objects
which_genome,
genome assembly used ("hg19", "hg38")
qual_filt
quality score filter above which is returned
Value
filtered bedpe list
brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/somenone_gridss.R
| gridss_bedpe_list | R Documentation |
Produce a list of bedpe, from a list of breakpoint GRanges, with score > qual_filt and both breakpoints within annotated genes
Description
Produce a list of bedpe, from a list of breakpoint GRanges, with score > qual_filt and both breakpoints within annotated genes
Usage
gridss_bedpe_list(bpgr_list, which_genome, qual_filt = 2)
Arguments
bpgr_list |
list of per-sample breakpont GRanges objects |
which_genome, |
genome assembly used ("hg19", "hg38") |
qual_filt |
quality score filter above which is returned |
Value
filtered bedpe list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.