Files in brucemoran/somenone
R functions required by the somenone NextFlow nf-core pipeline

.Rbuildignore

.Rhistory

.Rproj.user/6628D57B/cpp-definition-cache

.Rproj.user/6628D57B/pcs/files-pane.pper

.Rproj.user/6628D57B/pcs/source-pane.pper

.Rproj.user/6628D57B/pcs/windowlayoutstate.pper

.Rproj.user/6628D57B/pcs/workbench-pane.pper

.Rproj.user/6628D57B/rmd-outputs

.Rproj.user/6628D57B/saved_source_markers

.Rproj.user/shared/notebooks/patch-chunk-names

.gitignore

DESCRIPTION

NAMESPACE

R/somenone_facets.R R/somenone_gridss.R R/somenone_pairtree.R R/somenone_variantconsensus.R R/someone_evoverse.R

inst/extdata/GRCh38_Verily_v1.genome.noChr.dict

inst/extdata/cancer_gene_census.bed

inst/extdata/test_ex_soma.facets.r10.csv

inst/extdata/test_ex_soma.fit_cncf_jointsegs.tsv

inst/extdata/test_ex_soma.fit_ploidy_purity.tsv

man/anno_cgc_cna.Rd man/anno_ens_cna.Rd man/at_least_two.Rd man/bin_granges.Rd man/bin_maker.Rd man/cna_master_muts.Rd man/collapse_gr_list.Rd man/download_chimerkb4.Rd man/facets_cna_call.Rd man/facets_cna_consensus.Rd man/facets_jointsegs_parse_to_gr.Rd man/findin_chimerkb4.Rd man/gr_super_alt_plot.Rd man/gr_super_set.Rd man/granges_sdin.Rd man/gridss_annotate_gr.Rd man/gridss_bedpe_list.Rd man/gridss_parse_multi_vcf.Rd man/gridss_parse_plot.Rd man/hello.Rd man/loh_summary.Rd man/make_pairtree_input.Rd man/make_pairtree_json.Rd man/master_intersect_cna_grlist.Rd man/master_intersect_snv_grlist.Rd man/master_mcols.Rd man/mut_cn_to_pyclone.Rd man/output_out_list.Rd man/parse_cn_list.Rd man/parse_input_df.Rd man/plot_circos_sv.Rd man/plot_consensus.Rd man/plot_from_tsv.Rd man/plot_out_list.Rd man/plot_single.Rd man/prep_plot_circos_sv.Rd man/process_in_list.Rd man/rdata_gr_list.Rd man/seqlengths_df.Rd man/sub_hgvsp.Rd man/summarise_master.Rd man/test_seqinfo.Rd man/variant_consensus.Rd man/vcf_parse_gr.Rd man/vcf_vep_ann_parse_soma_gr.Rd

recipe.somenone_singualrity.0.0.6

somenone.Rcheck/00_pkg_src/somenone/DESCRIPTION

somenone.Rcheck/00_pkg_src/somenone/NAMESPACE

somenone.Rcheck/00_pkg_src/somenone/man/combn_at_least_two.Rd

somenone.Rcheck/00_pkg_src/somenone/man/download_chimerkb4.Rd somenone.Rcheck/00_pkg_src/somenone/man/facets_cna_call.Rd somenone.Rcheck/00_pkg_src/somenone/man/facets_cna_consensus.Rd

somenone.Rcheck/00_pkg_src/somenone/man/facets_jointsegs_parse_to_gr (1).Rd

somenone.Rcheck/00_pkg_src/somenone/man/facets_jointsegs_parse_to_gr.Rd somenone.Rcheck/00_pkg_src/somenone/man/findin_chimerkb4.Rd

somenone.Rcheck/00_pkg_src/somenone/man/gr_super_alt_plot (1).Rd

somenone.Rcheck/00_pkg_src/somenone/man/gr_super_alt_plot.Rd somenone.Rcheck/00_pkg_src/somenone/man/gr_super_set.Rd somenone.Rcheck/00_pkg_src/somenone/man/granges_sdin.Rd somenone.Rcheck/00_pkg_src/somenone/man/gridss_annotate_gr.Rd

somenone.Rcheck/00_pkg_src/somenone/man/gridss_bedpe_list (1).Rd

somenone.Rcheck/00_pkg_src/somenone/man/gridss_bedpe_list.Rd

somenone.Rcheck/00_pkg_src/somenone/man/gridss_parse_multi_vcf (1).Rd

somenone.Rcheck/00_pkg_src/somenone/man/plot_circos_sv (1).Rd

somenone.Rcheck/00_pkg_src/somenone/man/plot_circos_sv.Rd

somenone.Rcheck/00_pkg_src/somenone/man/plot_cna_df.Rd

somenone.Rcheck/00_pkg_src/somenone/man/plot_consensus.Rd

somenone.Rcheck/00_pkg_src/somenone/man/plot_consensus_list.Rd

somenone.Rcheck/00_pkg_src/somenone/man/plot_consensus_single.Rd

somenone.Rcheck/00_pkg_src/somenone/man/plot_from_tsv.Rd somenone.Rcheck/00_pkg_src/somenone/man/plot_out_list.Rd somenone.Rcheck/00_pkg_src/somenone/man/plot_single.Rd somenone.Rcheck/00_pkg_src/somenone/man/prep_plot_circos_sv.Rd

somenone.Rcheck/00_pkg_src/somenone/man/process_in_list (1).Rd

somenone.Rcheck/00_pkg_src/somenone/man/process_in_list.Rd

somenone.Rcheck/00_pkg_src/somenone/man/raw_afs.Rd

somenone.Rcheck/00_pkg_src/somenone/man/rdata_gr_list.Rd somenone.Rcheck/00_pkg_src/somenone/man/seqlengths_df.Rd somenone.Rcheck/00_pkg_src/somenone/man/sub_hgvsp.Rd somenone.Rcheck/00_pkg_src/somenone/man/summarise_master.Rd somenone.Rcheck/00_pkg_src/somenone/man/test_seqinfo.Rd

somenone.Rcheck/00_pkg_src/somenone/man/variant_consensus (1).Rd

somenone.Rcheck/00_pkg_src/somenone/man/variant_consensus.Rd somenone.Rcheck/00_pkg_src/somenone/man/vcf_parse_gr.Rd somenone.Rcheck/00_pkg_src/somenone/man/vcf_vep_ann_parse_soma_gr.Rd

somenone.Rcheck/00_pkg_src/somenone/man/write_consensus_all.Rd

somenone.Rcheck/00check.log

tests/testthat.R tests/testthat/test-somenone_facets.R

brucemoran/somenone documentation built on Nov. 1, 2022, 3:56 p.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

brucemoran/somenone
R functions required by the somenone NextFlow nf-core pipeline

Files in brucemoran/somenone
R functions required by the somenone NextFlow nf-core pipeline

R Package Documentation

Browse R Packages

We want your feedback!

brucemoran/somenone R functions required by the somenone NextFlow nf-core pipeline

Files in brucemoran/somenone R functions required by the somenone NextFlow nf-core pipeline

R Package Documentation

Browse R Packages

We want your feedback!

brucemoran/somenone
R functions required by the somenone NextFlow nf-core pipeline

Files in brucemoran/somenone
R functions required by the somenone NextFlow nf-core pipeline