Files in campbio/musicatk
Mutational Signature Comprehensive Analysis Toolkit
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/annotate_variants.R
R/class_count_table.R
R/class_musica.R
R/class_result_collection.R
R/class_result_model.R
R/compare_results.R
R/cosmic_data.R
R/differential_analysis.R
R/discovery_prediction.R
R/k_val_assit.R
R/kmeans.R
R/load_data.R
R/misc_functions.R
R/musicatk.R
R/plot_exposures.R
R/plot_heatmap.R
R/plot_sample_counts.R
R/plot_sample_reconstruction_error.R
R/plot_signatures.R
R/plotting.R
R/standard_tables.R
R/table_utils.R
R/test_data.R
R/umap.R
R/utils-pipe.R
README.md
_pkgdown.yml
codecov.yml
data/cosmic_v2_sigs.rda
data/cosmic_v3_dbs_sigs.rda
data/cosmic_v3_indel_sigs.rda
data/cosmic_v3_sbs_sigs.rda
data/cosmic_v3_sbs_sigs_exome.rda
data/dbs_musica.rda
data/indel_musica.rda
data/musica.rda
data/musica_annot.rda
data/musica_sbs96.rda
data/musica_sbs96_tiny.rda
data/rep_range.rda
data/res.rda
data/res_annot.rda
docs/404.html
docs/articles/articles/installation.html
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docs/articles/articles/ui_screenshots/CompareTable.jpg
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docs/articles/articles/ui_screenshots/DATab.jpg
docs/articles/articles/ui_screenshots/DiscoverTab.jpg
docs/articles/articles/ui_screenshots/PredictDropdown.jpg
docs/articles/articles/ui_screenshots/PredictOptions.jpg
docs/articles/articles/ui_screenshots/PredictTab.jpg
docs/articles/articles/ui_screenshots/TCGA.jpg
docs/articles/articles/ui_screenshots/TableTab.jpg
docs/articles/articles/ui_screenshots/WilcoxonTable.jpg
docs/articles/articles/ui_screenshots/annotation_file.jpg
docs/articles/articles/ui_screenshots/cluster1.jpg
docs/articles/articles/ui_screenshots/cluster2.jpg
docs/articles/articles/ui_screenshots/cluster_tbl.jpg
docs/articles/articles/ui_screenshots/cluster_visual.jpg
docs/articles/articles/ui_screenshots/combine-table.jpg
docs/articles/articles/ui_screenshots/create_musica.jpg
docs/articles/articles/ui_screenshots/create_musica1.jpg
docs/articles/articles/ui_screenshots/download.jpg
docs/articles/articles/ui_screenshots/exp_box_setting1.jpg
docs/articles/articles/ui_screenshots/exp_box_setting2.jpg
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man/plot_differential_analysis.Rd
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man/rep_range.Rd
man/res.Rd
man/res_annot.Rd
man/result_collection-class.Rd
man/result_list.Rd
man/result_model-class.Rd
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vignettes/musicatk.Rmd
