Files in carolinafishes/toast

Transcriptome Ortholog Alignment Sequence Tools

R/CompleteCoverage.R R/EntrezDownload.R R/FastaIntoPhy.R R/HMMScanParse.R R/MafftOrientAlign.R R/MissingDataTable.R R/MissingStreambar.R R/MissingValue.R R/NexIntoFas.R R/ParseScores.R R/PartitionTable.R R/PhyIntoFasta.R R/PhyIntoNex.R R/PhyloMissmap.R R/PlotBuscoSummaries.R R/PruneSuperAlign.R R/SuperAlign.R R/ThresholdDataTable.R R/ThresholdExtract.R R/ToastGoSlim.R R/ToastGoSlim_testingFunction.R R/VisTreeData.R R/VisualizeCoverage (Autosaved).R R/VisualizeCoverage.R R/VisualizeCoverageThreshold.R R/VisualizePBR.R R/VisualizeTaxonomyInteractive.R R/VisualizeThreshold.R R/add_sequence_column_protein.R R/compile_busco_summaries.R R/csv2Fasta.R R/extractBuscoSeqsComp.R R/extractBuscoSeqsDup.R R/extractBuscoSeqsFrag.R R/extractBuscos.R R/extractSequences.R R/filterOverlappingDomains.R R/geneTreeFilter.R R/missingDataSummary.R README.md TOAST_tutorial.R legacy_functions/ExtractBuscoSeqs.R legacy_functions/ParseBuscoResults.R legacy_functions/ParseBuscoResultsThreshold.R legacy_functions/RunBusco.R man/EntrezDownload.Rd man/FastaIntoPhy.Rd man/HMMScanParse.Rd man/MafftOrientAlign.Rd man/MissingDataTable.Rd man/MissingStreambar.Rd man/NexIntoFas.Rd man/ParseScores.Rd man/PartitionTable.Rd man/PhyIntoFasta.Rd man/PhyIntoNex.Rd man/PhyloMissmap.Rd man/PlotBuscoSummaries.Rd man/SuperAlign.Rd man/ThresholdDataTable.Rd man/ThresholdExtract.Rd man/ToastGoSlim.Rd man/VisualizeCoverage.Rd man/VisualizePBR.Rd man/VisualizeTaxonomyInteractive.Rd man/VisualizeThreshold.Rd man/compile_busco_summaries.Rd man/csv2Fasta.Rd man/extractBuscoSeqsComp.Rd man/extractBuscoSeqsDup.Rd man/extractBuscoSeqsFrag.Rd man/extractBuscos.Rd man/extractSequences.Rd man/filterOverlappingDomains.Rd man/geneTreeFilter.Rd