Files in compbiocore/qckitfastq
FASTQ Quality Control
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/GC_content.R
R/RcppExports.R
R/adapter_content.R
R/dimensions.R
R/kmer_count.R
R/overrep_kmer.R
R/overrep_reads.R
R/per_base_quality.R
R/per_read_quality.R
R/plot_GC_content.R
R/plot_adapter_content.R
R/plot_overrep_kmer.R
R/plot_overrep_reads.R
R/plot_per_base_quality.R
R/plot_per_read_quality.R
R/plot_read_content.R
R/plot_read_length.R
R/rcpp.r
R/read_content.R
R/read_length.R
R/run_all.R
README.md
configure.sh
configure.win
inst/NEWS
inst/extdata/10^5_reads_test.fq.gz
inst/extdata/adapters.txt
inst/extdata/test.fq.gz
inst/extdata/throw_error.fq.gz
make.R
man/GC_content.Rd
man/adapter_content.Rd
man/calc_adapter_content.Rd
man/calc_format_score.Rd
man/calc_over_rep_seq.Rd
man/dimensions.Rd
man/find_format.Rd
man/gc_per_read.Rd
man/kmer_count.Rd
man/overrep_kmer.Rd
man/overrep_reads.Rd
man/per_base_quality.Rd
man/per_read_quality.Rd
man/plot_GC_content.Rd
man/plot_adapter_content.Rd
man/plot_outliers.Rd
man/plot_overrep_kmer.Rd
man/plot_overrep_reads.Rd
man/plot_per_base_quality.Rd
man/plot_per_read_quality.Rd
man/plot_read_content.Rd
man/plot_read_length.Rd
man/qual_score_per_read.Rd
man/read_base_content.Rd
man/read_content.Rd
man/read_length.Rd
man/run_all.Rd
mkdocs.yml
ready.yml
response.md
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/calc_adapter_content.cpp
src/gzstream.cpp
src/gzstream.h
src/read_fastq.cpp
tests/testthat.R
tests/testthat/test_adapter_content.R
tests/testthat/test_dimensions.R
tests/testthat/test_gc.R
tests/testthat/test_kmer.R
tests/testthat/test_overrep.R
tests/testthat/test_qualityscore.R
tests/testthat/test_read_content.R
tests/testthat/test_read_fastq.R
tests/testthat/test_run_all.R
vignettes/qckitfastq.bib
vignettes/vignette-qckitfastq.Rmd
