GC_content: Calculates GC content percentage for each read in the...

In compbiocore/qckitfastq: FASTQ Quality Control

Description

Calculates GC content percentage for each read in the dataset.

Usage

GC_content(infile, output_file = NA)

Arguments

infile	the object that is the path to the FASTQ file
output_file	File to write results to. Default NA.

Value

Data frame with read ID and GC content of each read.

Examples

infile <- system.file("extdata", "10^5_reads_test.fq.gz",
    package = "qckitfastq")
head(GC_content(infile))

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.