per_base_quality: Compute the mean, median, and percentiles of quality score...
In compbiocore/qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/per_base_quality.R
Description
Compute the mean, median, and percentiles of quality score per base.
This is returned as a data frame.
Usage
1
per_base_quality(infile, output_file = NA)
Arguments
infile
Path to a gzippped FASTQ file
output_file
File to write results in CSV format to. Default NA.
Value
A dataframe of the mean, median and quantiles of the FASTQ file
Author(s)
Wenyue Xing, wenyue_xing@brown.edu
August Guang, august_guang@brown.edu
Examples
1
2
per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz",
package = "qckitfastq"))
compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/per_base_quality.R
Description
Compute the mean, median, and percentiles of quality score per base. This is returned as a data frame.
Usage
1 | per_base_quality(infile, output_file = NA)
|
Arguments
infile |
Path to a gzippped FASTQ file |
output_file |
File to write results in CSV format to. Default NA. |
Value
A dataframe of the mean, median and quantiles of the FASTQ file
Author(s)
Wenyue Xing, wenyue_xing@brown.edu
August Guang, august_guang@brown.edu
Examples
1 2 | per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz",
package = "qckitfastq"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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