per_read_quality: Compute the mean quality score per read. 'per_read_quality'

In compbiocore/qckitfastq: FASTQ Quality Control

Description

Compute the mean quality score per read. per_read_quality

Usage

per_read_quality(infile, output_file = NA)

Arguments

infile	Path to FASTQ file
output_file	File to write plot to. Will not write to file if NA. Default NA.

Value

Data frame of mean quality score per read

Examples

infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
prq <- per_read_quality(infile)

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.