plot_outliers: Determine how to plot outliers. Heuristic used is whether...

Description Usage Arguments Value

View source: R/plot_overrep_kmer.R

Description

Determine how to plot outliers. Heuristic used is whether their obsexp_ratio differs by more than 1 and whether they fall into the same bin or not. If for 2 outliers, obsexp_ratio differs by less than .4 and they are in the same bin, then combine into a single plotting point. NOT FULLY FUNCTIONAL

Usage

1
plot_outliers(overkm, top_num)

Arguments

overkm

data frame with columns pos, obsexp_ratio, and kmer that has already been reordered by descending obsexp_ratio

top_num

number of most overrepresented kmers to plot. Default is 5.

Value

currently 0 as function is not fully working.


compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.