qual_score_per_read: Calculate the mean quality score per read of the FASTQ...
In compbiocore/qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
Description
Calculate the mean quality score per read of the FASTQ gzipped file
Usage
1
qual_score_per_read(infile)
Arguments
infile
A string giving the path for the fastqfile
Value
mean quality per read
Examples
1
2
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
qual_score_per_read(infile)$q50_per_position[1:10]
compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Calculate the mean quality score per read of the FASTQ gzipped file
Usage
1 | qual_score_per_read(infile)
|
Arguments
infile |
A string giving the path for the fastqfile |
Value
mean quality per read
Examples
1 2 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
qual_score_per_read(infile)$q50_per_position[1:10]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.