plot_read_content: Plot the per position nucleotide content.
In compbiocore/qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
View source: R/plot_read_content.R
Description
Plot the per position nucleotide content.
Usage
1
plot_read_content(read_content, output_file = NA)
Arguments
read_content
Data frame produced by read_content function.
output_file
File to save plot to. Will not write to file if NA. Default NA.
Value
ggplot line plot of all nucleotide content inclding A, T, G, C and N
Examples
1
2
3
4
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_content <- read_content(fseq)
plot_read_content(read_content)
compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.
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Description Usage Arguments Value Examples
View source: R/plot_read_content.R
Description
Plot the per position nucleotide content.
Usage
1 | plot_read_content(read_content, output_file = NA)
|
Arguments
read_content |
Data frame produced by read_content function. |
output_file |
File to save plot to. Will not write to file if NA. Default NA. |
Value
ggplot line plot of all nucleotide content inclding A, T, G, C and N
Examples
1 2 3 4 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_content <- read_content(fseq)
plot_read_content(read_content)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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