plot_overrep_reads: Plot the top 5 seqeunces

Description Usage Arguments Value Examples

View source: R/plot_overrep_reads.R

Description

Plot the top 5 seqeunces

Usage

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Arguments

overrep_reads

the table that sorts the sequence content and corresponding counts in descending order

output_file

File to save plot to. Will not write to file if NA. Default NA.

Value

plot of the top 5 overrepresented sequences

Examples

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infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
overrep_df <- overrep_reads(infile)
plot_overrep_reads(overrep_df)

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.