plot_overrep_reads: Plot the top 5 seqeunces
In compbiocore/qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
View source: R/plot_overrep_reads.R
Description
Plot the top 5 seqeunces
Usage
1
plot_overrep_reads(overrep_reads, output_file = NA)
Arguments
overrep_reads
the table that sorts the sequence content and corresponding counts in descending order
output_file
File to save plot to. Will not write to file if NA. Default NA.
Value
plot of the top 5 overrepresented sequences
Examples
1
2
3
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
overrep_df <- overrep_reads(infile)
plot_overrep_reads(overrep_df)
compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/plot_overrep_reads.R
Description
Plot the top 5 seqeunces
Usage
1 | plot_overrep_reads(overrep_reads, output_file = NA)
|
Arguments
overrep_reads |
the table that sorts the sequence content and corresponding counts in descending order |
output_file |
File to save plot to. Will not write to file if NA. Default NA. |
Value
plot of the top 5 overrepresented sequences
Examples
1 2 3 | infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
overrep_df <- overrep_reads(infile)
plot_overrep_reads(overrep_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.