read_length: Creates a data frame of read lengths and the number of reads...
In compbiocore/qckitfastq: FASTQ Quality Control
Description
Usage
Arguments
Value
Examples
Description
Creates a data frame of read lengths and the number of reads with
that read length.
Usage
1
read_length(fseq, output_file = NA)
Arguments
fseq
a seqTools object produced by seqTools::fastqq on the raw FASTQ file
output_file
File to save data frame to. Default NA.
Value
Data frame of read lengths and number of reads with that length.
Examples
1
2
3
4
infile <- system.file("extdata","test.fq.gz",
package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_len <- read_length(fseq)
compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.
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Description Usage Arguments Value Examples
Description
Creates a data frame of read lengths and the number of reads with that read length.
Usage
1 | read_length(fseq, output_file = NA)
|
Arguments
fseq |
a seqTools object produced by seqTools::fastqq on the raw FASTQ file |
output_file |
File to save data frame to. Default NA. |
Value
Data frame of read lengths and number of reads with that length.
Examples
1 2 3 4 | infile <- system.file("extdata","test.fq.gz",
package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_len <- read_length(fseq)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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