plot_per_base_quality: Generate a boxplot of the per position quality score.

In compbiocore/qckitfastq: FASTQ Quality Control

Description

Generate a boxplot of the per position quality score.

Usage

plot_per_base_quality(per_base_quality, output_file = NA)

Arguments

per_base_quality	a data frame of the mean, median and quantiles of sequence quality per base. Most likely generated with the 'per_base_quality' function.
output_file	File to save plot to. Will not write to file if NA. Default NA.

Value

A boxplot of per position quality score distribution.

Examples

pbq <- per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq"))
plot_per_base_quality(pbq)

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.