plot_per_base_quality: Generate a boxplot of the per position quality score.

Description Usage Arguments Value Examples

View source: R/plot_per_base_quality.R

Description

Generate a boxplot of the per position quality score.

Usage

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Arguments

per_base_quality

a data frame of the mean, median and quantiles of sequence quality per base. Most likely generated with the 'per_base_quality' function.

output_file

File to save plot to. Will not write to file if NA. Default NA.

Value

A boxplot of per position quality score distribution.

Examples

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pbq <- per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq"))
plot_per_base_quality(pbq)

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.