plot_per_read_quality: Plot the mean quality score per sequence as a histogram. High...

Description Usage Arguments Value Examples

View source: R/plot_per_read_quality.R

Description

Plot the mean quality score per sequence as a histogram. High quality sequences are those mostly distributed over 30. Low quality sequences are those mostly under 30. plot_per_read_quality

Usage

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plot_per_read_quality(prq, output_file = NA)

Arguments

prq

Data frame from per_read_quality function

output_file

File to write plot to. Will not write to file if NA. Default NA.

Value

Plot of mean quality score per read

Examples

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infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
prq <- per_read_quality(infile)
plot_per_read_quality(prq)

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.