overrep_reads: Sort all sequences per read by count.

In compbiocore/qckitfastq: FASTQ Quality Control

Description

Sort all sequences per read by count.

Usage

overrep_reads(infile, output_file = NA)

Arguments

infile	Path to gzippped FASTQ file.
output_file	File to save data frame to. Default NA.

Value

Table of sequences sorted by count.

Examples

infile <- system.file("extdata", "10^5_reads_test.fq.gz",
    package = "qckitfastq")
overrep_reads(infile)[1:5,]

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.