read_content: Compute nucleotide content per position. Wrapper function...

Description Usage Arguments Value Examples

View source: R/read_content.R

Description

Compute nucleotide content per position. Wrapper function around seqTools.

Usage

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read_content(fseq, output_file = NA)

Arguments

fseq

a seqTools::fastqq object

output_file

File to write results in CSV format to. Will not write to file if NA. Default NA.

Value

Data frame of nucleotide sequence content per position

Examples

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infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_content(fseq)

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.