plot_GC_content: Generate mean GC content histogram.

In compbiocore/qckitfastq: FASTQ Quality Control

Description

Generate mean GC content histogram.

Usage

plot_GC_content(gc_df, output_file = NA)

Arguments

gc_df	the object that is the GC content vectors generated from GC content function
output_file	File to write plot to. Will not write to file if NA. Default NA.

Value

A histogram of mean GC content.

Examples

infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
gc_df<-GC_content(infile)
plot_GC_content(gc_df)

compbiocore/qckitfastq documentation built on Sept. 20, 2019, 9:30 a.m.