out_grad_parent: Gradient function for 'dbetabinom_mu_rho_cpp_double'.
In dcgerard/updogAlpha: Using Parental Data for Offspring Genotyping

Description Usage Arguments Value Author(s)

Gradient function for dbetabinom_mu_rho_cpp_double.

1	out_grad_parent(pcounts, psize, out_mean, out_disp, weight)

`pcounts`	The number of counts of the reference allele we observe in a parent.
`psize`	The total number of reads we observe in a parent.
`out_mean`	The mean of the BB.
`out_disp`	The overdispersion parameter of the BB.
`weight`	The probability a point is an outlier.

A vector of length two. The first element of which is the partial derivative of the outlier mean. The second element of which is the partial derivative of the outlier overdispersion parameter.

David Gerard

dcgerard/updogAlpha documentation built on May 14, 2019, 3:10 a.m.