out_grad_wrapp: Wrapper for 'outlier_grad'.

Description Usage Arguments Author(s)

View source: R/update_all.R

Description

Wrapper for outlier_grad.

Usage

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out_grad_wrapp(parvec, ocounts, osize, weight_vec, p1counts = NULL,
  p1size = NULL, p1weight = NULL, p2counts = NULL, p2size = NULL,
  p2weight = NULL, min_disp = 0)

Arguments

parvec

A numeric vector of length two. The first element is the outlier mean. The second element is the outlier overdispersion parameter.

ocounts

The offspring counts of the reference allele.

osize

The offspring counts of reads.

weight_vec

The probability a point is an outlier.

p1counts

The parent 1 counts of the reference allele.

p1size

The parent 1 counts of reads.

p1weight

The probability parent 1 is an outlier.

p2counts

The parent 2 counts of the reference allele.

p2size

The parent 2 counts of reads.

p2weight

The probability parent 2 is an outlier.

min_disp

The bound on the overdispersion parameter (can't be too small).

Author(s)

David Gerard


dcgerard/updogAlpha documentation built on May 14, 2019, 3:10 a.m.