plot_geno_base: The base R graphics version of 'plot_geno'.
In dcgerard/updogAlpha: Using Parental Data for Offspring Genotyping

Description Usage Arguments Author(s) See Also

The base R graphics version of plot_geno.

plot_geno_base(ocounts, osize, ploidy, p1counts = NULL, p1size = NULL,
  p2counts = NULL, p2size = NULL, ogeno = NULL, seq_error = 0,
  bias_val = 1, prob_ok = NULL, maxpostprob = NULL, p1geno = NULL,
  p2geno = NULL, use_colorblind = TRUE)

`ocounts`	A vector of non-negative integers. The number of reference alleles observed in the offspring.
`osize`	A vector of positive integers. The total number of reads in the offspring.
`ploidy`	A non-negative integer. The ploidy of the species.
`p1counts`	A vector of non-negative integers. The number of reference alleles observed in parent 1.
`p1size`	A vector of positive integers. The total number of reads in parent 1.
`p2counts`	A vector of non-negative integers. The number of reference alleles observed in parent 2.
`p2size`	A vector of positive integers. The total number of reads in parent 2.
`ogeno`	The child genotypes
`seq_error`	The average sequencing error rate.
`bias_val`	The bias parameter.
`prob_ok`	A vector of posterior probabilities of not being a mistake.
`maxpostprob`	A vector of the posterior probabilities of begin at the modal probability.
`p1geno`	Parent 1's genotype.
`p2geno`	Parent 2's genotype.
`use_colorblind`	A logical. Should we use a colorblind safe palette (`TRUE`), or not (`FALSE`)?