snpdat: GBS data from Shirasawa et al (2017)
In dcgerard/updogAlpha: Using Parental Data for Offspring Genotyping
Description
Usage
Format
Source
References
Description
Contains counts of reference alleles and total read counts from the GBS data of Shirasawa et al (2017) for
the three SNP's used as examples in Gerard, Ferrao, and Stephens (2017).
Usage
1
Format
A tibble with 419 rows and 4 columns:
- id
The identification label of the individuals.
- snp
The SNP label.
- counts
The number of read-counts that support the reference allele.
- size
The total number of read-counts at a given SNP.
Source
http://sweetpotato-garden.kazusa.or.jp/
References
Shirasawa, Kenta, Masaru Tanaka, Yasuhiro Takahata, Daifu Ma, Qinghe Cao, Qingchang Liu, Hong Zhai et al. "A high-density SNP genetic map consisting of a complete set of homologous groups in autohexaploid sweetpotato (Ipomoea batatas)." Scientific Reports 7 (2017). DOI: 10.1038/srep44207
Gerard, David, Luis Felipe Ventorim Ferr<c3><a3>o, and Matthew Stephens. 2017. "Harnessing Empirical Bayes and Mendelian Segregation for Genotyping Autopolyploids with Messy Sequencing Data." Overleaf Preprint.
dcgerard/updogAlpha documentation built on May 14, 2019, 3:10 a.m.
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Description Usage Format Source References
Description
Contains counts of reference alleles and total read counts from the GBS data of Shirasawa et al (2017) for the three SNP's used as examples in Gerard, Ferrao, and Stephens (2017).
Usage
1 |
Format
A tibble with 419 rows and 4 columns:
- id
The identification label of the individuals.
- snp
The SNP label.
- counts
The number of read-counts that support the reference allele.
- size
The total number of read-counts at a given SNP.
Source
http://sweetpotato-garden.kazusa.or.jp/
References
Shirasawa, Kenta, Masaru Tanaka, Yasuhiro Takahata, Daifu Ma, Qinghe Cao, Qingchang Liu, Hong Zhai et al. "A high-density SNP genetic map consisting of a complete set of homologous groups in autohexaploid sweetpotato (Ipomoea batatas)." Scientific Reports 7 (2017). DOI: 10.1038/srep44207
Gerard, David, Luis Felipe Ventorim Ferr<c3><a3>o, and Matthew Stephens. 2017. "Harnessing Empirical Bayes and Mendelian Segregation for Genotyping Autopolyploids with Messy Sequencing Data." Overleaf Preprint.
R Package Documentation
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