updog_iterate: Iterate between indiividual level estimates and joint...
In dcgerard/updogAlpha: Using Parental Data for Offspring Genotyping

Iterate between indiividual level estimates and joint averaging.

1 2	updog_iterate(ocounts, osize, qarray, r1vec, r2vec, seq_error = 0.01, itermax = 1000, tol = 10^-4)

`ocounts`	A vector of non-negative integers. The ith element is the number of reads of the reference allele in the ith child.
`osize`	A vector of positive integers. The ith element is the total number of reads for the ith child.
`qarray`	An array of proportions. Each dimension size is equal to the ploidy plus 1.
`r1vec`	The posterior probabilities of the genotypes of parent 1 conditional only on the sequence data from parent 1.
`r2vec`	The posterior probabilities of the genotypes of parent 2 conditional only on the sequence data from parent 2.
`seq_error`	A non-negative numeric. This is the known sequencing error rate. The default is to estimate this using data that are all approximately the reference allele.
`itermax`	The number of times to iterate between the two approaches.
`tol`	A positive numeric. The tolderance for the stopping criteria.