SpatialRNA-class: An S4 class to represent Spatial Transcriptomic data
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
SpatialRNA-class R Documentation
An S4 class to represent Spatial Transcriptomic data
Description
An S4 class to represent Spatial Transcriptomic data
Slots
coordsa dataframe with x and y coordinates of each pixel
countsa sparse matrix of raw counts for each gene (rowname)
and each pixel (colnames or barcodes)
n_cell_typethe number of cell types
cell_type_namesa list of cell type names
nUMIa named list (by barcode) of total UMIs per pixel
cell_labelsa factor of cell type labels for each pixel
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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| SpatialRNA-class | R Documentation |
An S4 class to represent Spatial Transcriptomic data
Description
An S4 class to represent Spatial Transcriptomic data
Slots
coordsa dataframe with x and y coordinates of each pixel
countsa sparse matrix of raw counts for each gene (rowname) and each pixel (colnames or barcodes)
n_cell_typethe number of cell types
cell_type_namesa list of cell type names
nUMIa named list (by barcode) of total UMIs per pixel
cell_labelsa factor of cell type labels for each pixel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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