set_likelihood_vars: Sets Precomputed Probabiliites as Global Variable
In dmcable/RCTD: SpatialeXpressionR: Cell type identification and cell type-specific differential expression in spatial transcriptomics
set_likelihood_vars R Documentation
Sets Precomputed Probabiliites as Global Variable
Description
Given a matrix, Q_mat, or log P(y|x), under the Poisson-Lognormal model.
Sets this as a global variable for fast computations in the future.
Usage
set_likelihood_vars(Q_mat_loc, X_vals, sigma = NULL)
Arguments
Q_mat_loc
Matrix of precomputed probabiliites, as previously computed by get_Q_mat
X_vals
the x-values used for computing the likelihood functions.
sigma
(default NULL). If NULL, computes SQ_mat according to Q_mat_loc.
Else, uses precomputed values of SQ_mat stored in SQ_mat_all with index sigma
dmcable/RCTD documentation built on Feb. 24, 2024, 11:03 p.m.
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| set_likelihood_vars | R Documentation |
Sets Precomputed Probabiliites as Global Variable
Description
Given a matrix, Q_mat, or log P(y|x), under the Poisson-Lognormal model.
Sets this as a global variable for fast computations in the future.
Usage
set_likelihood_vars(Q_mat_loc, X_vals, sigma = NULL)
Arguments
Q_mat_loc |
Matrix of precomputed probabiliites, as previously computed by |
X_vals |
the x-values used for computing the likelihood functions. |
sigma |
(default NULL). If NULL, computes SQ_mat according to Q_mat_loc. Else, uses precomputed values of SQ_mat stored in SQ_mat_all with index sigma |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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