addCellStatistics | R Documentation |
adds cells statistics to the giotto object
addCellStatistics(
gobject,
feat_type = NULL,
spat_unit = NULL,
expression_values = c("normalized", "scaled", "custom"),
detection_threshold = 0,
return_gobject = TRUE
)
gobject |
giotto object |
feat_type |
feature type |
spat_unit |
spatial unit |
expression_values |
expression values to use |
detection_threshold |
detection threshold to consider a gene detected |
return_gobject |
boolean: return giotto object (default = TRUE) |
This function will add the following statistics to cell metadata:
nr_feats: Denotes in how many features are detected per cell
perc_feats: Denotes what percentage of features is detected per cell
total_expr: Shows the total sum of feature expression per cell
giotto object if return_gobject = TRUE
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.