addGiottoLargeImage: addGiottoLargeImage

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

addGiottoLargeImage

Description

Adds giotto image objects to your giotto object

Usage

addGiottoLargeImage(
  gobject = NULL,
  largeImages = NULL,
  spat_loc_name = NULL,
  scale_factor = NULL,
  negative_y = TRUE,
  verbose = TRUE
)

Arguments

gobject	giotto object
largeImages	list of giottoLargeImage objects
spat_loc_name	provide spatial location slot in Giotto to align images. (optional)
scale_factor	provide scale of image pixel dimensions relative to spatial coordinates.
negative_y	map image to negative y spatial values if TRUE during automatic alignment. Meaning that origin is in upper left instead of lower left.
verbose	be verbose

Value

an updated Giotto object with access to the list of images

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.