aggregateStacks: aggregateStacks

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

aggregateStacks

Description

aggregate expression matrices from different z-stacks

Usage

aggregateStacks(
  gobject,
  spat_units,
  feat_type,
  values,
  summarize_expression = "sum",
  summarize_locations = "mean",
  new_spat_unit = "aggregate"
)

Arguments

gobject	giotto object
spat_units	spatial units to aggregate
feat_type	feature type
values	values to use
summarize_expression	method to summarize expression information
summarize_locations	method to summarize spatial location information
new_spat_unit	new name for aggregated spatial unit

Details

Combines both aggregateStacksExpression and aggregateStacksLocations

Value

giotto object

See Also

Other aggregate stacks: aggregateStacksExpression(), aggregateStacksLocations(), aggregateStacksPolygonOverlaps(), aggregateStacksPolygonsOLD(), aggregateStacksPolygons()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.