addGiottoImage: addGiottoImage

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

addGiottoImage

Description

Adds lists of giottoImages and giottoLargeImages to gobjects

Usage

addGiottoImage(
  gobject = NULL,
  images = NULL,
  largeImages = NULL,
  spat_loc_name = NULL,
  scale_factor = NULL,
  negative_y = TRUE
)

Arguments

gobject	gobject to add images objects to
images	list of giottoImages to add
largeImages	list of giottoLargeImages to add
spat_loc_name	provide spatial location slot in Giotto to align giottoImages. Defaults to first one
scale_factor	provide scale of image pixel dimensions relative to spatial coordinates.
negative_y	Map image to negative y spatial values if TRUE during automatic alignment. Meaning that origin is in upper left instead of lower left.

Value

an updated Giotto object with access to the list of images

See Also

Other basic image functions: plotGiottoImage(), reconnectGiottoImage(), updateGiottoImage()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.