addGenesPerc: addGenesPerc

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

addGenesPerc

Description

calculates the total percentage of (normalized) counts for a subset of selected genes

Usage

addGenesPerc(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  expression_values = c("normalized", "scaled", "custom"),
  genes = NULL,
  vector_name = "gene_perc",
  return_gobject = TRUE
)

Arguments

gobject	giotto object
spat_unit	spatial unit
feat_type	feature type
expression_values	expression values to use
genes	vector of selected genes
vector_name	column name as seen in pDataDT
return_gobject	boolean: return giotto object (default = TRUE)

Value

giotto object if return_gobject = TRUE, else a vector with

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.