annotateSpatialGrid: annotateSpatialGrid

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

annotateSpatialGrid

Description

annotate spatial grid with cell ID and cell metadata (optional)

Usage

annotateSpatialGrid(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spat_loc_name = "raw",
  spatial_grid_name = "spatial_grid",
  cluster_columns = NULL
)

Arguments

gobject	Giotto object
spat_unit	spatial unit
feat_type	feature type
spat_loc_name	name of spatial locations
spatial_grid_name	name of spatial grid, see showGiottoSpatGrids
cluster_columns	names of cell metadata, see pDataDT

Value

annotated spatial grid data.table

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.