average_feat_feat_expression_in_groups: average_feat_feat_expression_in_groups

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

average_feat_feat_expression_in_groups

Description

calculate average expression per cluster

Usage

average_feat_feat_expression_in_groups(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  cluster_column = "cell_types",
  feat_set_1,
  feat_set_2
)

Arguments

gobject	giotto object to use
spat_unit	spatial unit
feat_type	feature type
cluster_column	cluster column with cell type information
feat_set_1	first specific feat set from feat pairs
feat_set_2	second specific feat set from feat pairs

Value

data.table with average expression scores for each cluster

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.