addGiottoImageMG: addGiottoImageMG

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

addGiottoImageMG

Description

Adds giotto image objects to your giotto object

Usage

addGiottoImageMG(
  gobject,
  images,
  spat_unit = NULL,
  spat_loc_name = NULL,
  scale_factor = NULL,
  negative_y = TRUE
)

Arguments

gobject	giotto object
images	list of giotto image objects, see createGiottoImage
spat_unit	spatial unit
spat_loc_name	provide spatial location slot in Giotto to align images. Defaults to first one
scale_factor	provide scale of image pixel dimensions relative to spatial coordinates.
negative_y	Map image to negative y spatial values if TRUE during automatic alignment. Meaning that origin is in upper left instead of lower left.

Value

an updated Giotto object with access to the list of images

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.