annotateSpatialNetwork: annotateSpatialNetwork

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

annotateSpatialNetwork

Description

Annotate spatial network with cell metadata information.

Usage

annotateSpatialNetwork(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spatial_network_name = "Delaunay_network",
  cluster_column,
  create_full_network = FALSE
)

Arguments

gobject	giotto object
spat_unit	spatial unit
feat_type	feature type
spatial_network_name	name of spatial network to use
cluster_column	name of column to use for clusters
create_full_network	convert from reduced to full network representation

Value

annotated network in data.table format

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.