aggregateStacksExpression: aggregateStacksExpression

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

aggregateStacksExpression

Description

aggregate expression matrices from different z-stacks

Usage

aggregateStacksExpression(
  gobject,
  spat_units,
  feat_type,
  values = "raw",
  summarize = "sum",
  new_spat_unit = "aggregate",
  verbose = TRUE
)

Arguments

gobject	giotto object
spat_units	spatial units to aggregate
feat_type	feature type
values	values to use
summarize	method to summarize expression information
new_spat_unit	new name for aggregated spatial unit
verbose	verbosity

Value

giotto object

See Also

Other aggregate stacks: aggregateStacksLocations(), aggregateStacksPolygonOverlaps(), aggregateStacksPolygonsOLD(), aggregateStacksPolygons(), aggregateStacks()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.