Description Usage Arguments Value Author(s) See Also
View source: R/GSEAhyperGTest.R
Perform a Hypergeometric test, upon a GMT file.
This is a convenience wrapper around GMThyperGTest
.
1 | GSEAhyperGTest(genes, gmt, adjust.method = "none")
|
genes |
a vector of gene symbols |
gmt |
a gmt object. see |
adjust.method |
the multiple hypothesis correction value. see |
a data.frame
containing these columns:
“GeneSet”, “x”, “m”, “n”, “k”, “Pval”, “FDR”,
where:
“x” = the number of white balls drawn without replacement from an urn which contains both black and white balls.
“m” = the number of white balls in the urn.
“n” = the number of black balls in the urn.
“k” = the number of balls drawn from the urn.
Mark Cowley, 2009-01-15
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