gsea.compare.runs.filter: Function to filter a set of GSEA run comparisons, and/or to...

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

This also provides extensive ability to re-sort the filtered rows, via sort.by and the gsea.compare.runs.sort?

Usage

gsea.compare.runs.filter(x, fdr = NULL, mode = c("any", "all")[1],
  sort.by = c("none", "avgabs", "range", "deltaAB", 1))

Arguments

x	a data.frame from import.gsea.compare.runs
fdr	a single numeric value, such as 0.05 or NULL
mode	should “any”, or “all” of the values satisfy the filter?
sort.by	one of “none”, “avgabs”, “range”, “deltaAB”, or an integer. see gsea.compare.runs.sort

Details

If you want to just sort the rows, see gsea.compare.runs.sort, or set fdr=NULL.

Value

x with only the rows that satisfy the filter.

Author(s)

Mark Cowley, 2009-03-23

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.