Description Usage Arguments Value Author(s) See Also
View source: R/export.broad.res.R
This requires a matrix of data (such as from RMA) and a matrix of calls,
usually MAS5 calls
of P/M/A. If you use Affymetrix ST arrays, you can generate DABG calls,
then use dabg2calls
1 2 |
data |
matrix of expression levels. If this is log base 2, then it will be unlog2ged. If you use any other log base, then unlog2 it yourself |
calls |
matrix of calls: P/M/A |
description |
a description for each ProbeSet. If NULL, then rownames of data will be used. if it doesn't have names, we assume it is the same length and in samre order as nrow(data) if it does have names, then only the relevant values will be extracted using the rownames(data) as the key. |
file |
the filename |
missing |
the value to write if there's any NA values |
unlog2 |
logical: unlog the log-base-2 |
creates a res file
Mark Cowley, 2009-06-26
http://www.broadinstitute.org/cancer/software/genepattern/tutorial/gp_fileformats.html#res
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