export.gsea: Export a gsea object to the filesystem.
In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons
Description
Usage
Arguments
Value
Author(s)
Description
This is mostly used to export the edb portion of a gsea run, since copying
over the individual geneset reports etc sounds far too tedious, plus these
elements are not stored inside the GSEA object in R.
Usage
1
export.gsea(x, location, as.zip = FALSE, overwrite = FALSE)
Arguments
x
a GSEA object.
location
the dir that will be created. eg: “./GSEA/c2_all”,
“c2_all.zip”, and set as.zip=TRUE
as.zip
logical: create a zip file? If TRUE, then make sure the
location parameter is set to a zip file name, rather than a directory
path.
overwrite
logical: overwrite an existing file or directory?
Value
none. Creates either a directory, or a zip file of a directory.
It will only contain the information that was loaded by import.gsea, which means
that individual geneset html resports and pictures are not exported.
Author(s)
Mark Cowley, 2009-10-15
drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
This is mostly used to export the edb portion of a gsea run, since copying over the individual geneset reports etc sounds far too tedious, plus these elements are not stored inside the GSEA object in R.
Usage
1 | export.gsea(x, location, as.zip = FALSE, overwrite = FALSE)
|
Arguments
x |
a GSEA object. |
location |
the dir that will be created. eg: “./GSEA/c2_all”,
“c2_all.zip”, and set |
as.zip |
logical: create a zip file? If |
overwrite |
logical: overwrite an existing file or directory? |
Value
none. Creates either a directory, or a zip file of a directory. It will only contain the information that was loaded by import.gsea, which means that individual geneset html resports and pictures are not exported.
Author(s)
Mark Cowley, 2009-10-15
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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